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3 Commits
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a848a4b81d
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a848a4b81d | 10 months ago |
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75d2de0889 | 10 months ago |
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5ae8b7d071 | 10 months ago |
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__pycache__
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.venv
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.venv
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from abc import ABC, abstractmethod
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from pandas import DataFrame, Series
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from pandas.api.types import is_numeric_dtype
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from typing import Any, Union
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class DataFrameFunction(ABC):
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"""A command that may be applied in-place to a dataframe."""
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@abstractmethod
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def apply(self, df: DataFrame, label: str, series: Series) -> DataFrame:
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"""Apply the current function to the given dataframe, in-place.
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The series is described by its label and dataframe."""
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return df
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class MVStrategy(DataFrameFunction):
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"""A way to handle missing values in a dataframe."""
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@staticmethod
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def list_available(df: DataFrame, series: Series) -> list['MVStrategy']:
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"""Get all the strategies that can be used."""
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choices = [DropStrategy(), ModeStrategy()]
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if is_numeric_dtype(series):
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choices.extend((MeanStrategy(), MedianStrategy(), LinearRegressionStrategy()))
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return choices
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class ScalingStrategy(DataFrameFunction):
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"""A way to handle missing values in a dataframe."""
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@staticmethod
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def list_available(df: DataFrame, series: Series) -> list['MVStrategy']:
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"""Get all the strategies that can be used."""
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choices = [KeepStrategy()]
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if is_numeric_dtype(series):
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choices.extend((MinMaxStrategy(), ZScoreStrategy()))
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if series.sum() != 0:
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choices.append(UnitLengthStrategy())
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return choices
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class DropStrategy(MVStrategy):
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#@typing.override
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def apply(self, df: DataFrame, label: str, series: Series) -> DataFrame:
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df.dropna(subset=label, inplace=True)
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return df
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def __str__(self) -> str:
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return "Drop"
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class PositionStrategy(MVStrategy):
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#@typing.override
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def apply(self, df: DataFrame, label: str, series: Series) -> DataFrame:
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series.fillna(self.get_value(series), inplace=True)
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return df
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@abstractmethod
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def get_value(self, series: Series) -> Any:
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pass
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class MeanStrategy(PositionStrategy):
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#@typing.override
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def get_value(self, series: Series) -> Union[int, float]:
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return series.mean()
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def __str__(self) -> str:
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return "Use mean"
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class MedianStrategy(PositionStrategy):
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#@typing.override
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def get_value(self, series: Series) -> Union[int, float]:
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return series.median()
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def __str__(self) -> str:
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return "Use median"
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class ModeStrategy(PositionStrategy):
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#@typing.override
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def get_value(self, series: Series) -> Any:
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return series.mode()[0]
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def __str__(self) -> str:
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return "Use mode"
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class LinearRegressionStrategy(MVStrategy):
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def apply(self, df: DataFrame, label: str, series: Series) -> DataFrame:
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series.interpolate(inplace=True)
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return df
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def __str__(self) -> str:
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return "Use linear regression"
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class KeepStrategy(ScalingStrategy):
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#@typing.override
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def apply(self, df: DataFrame, label: str, series: Series) -> DataFrame:
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return df
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def __str__(self) -> str:
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return "No-op"
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class MinMaxStrategy(ScalingStrategy):
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#@typing.override
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def apply(self, df: DataFrame, label: str, series: Series) -> DataFrame:
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minimum = series.min()
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maximum = series.max()
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df[label] = (series - minimum) / (maximum - minimum)
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return df
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def __str__(self) -> str:
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return "Min-max"
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class ZScoreStrategy(ScalingStrategy):
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#@typing.override
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def apply(self, df: DataFrame, label: str, series: Series) -> DataFrame:
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df[label] = (series - series.mean()) / series.std()
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return df
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def __str__(self) -> str:
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return "Z-Score"
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class UnitLengthStrategy(ScalingStrategy):
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#@typing.override
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def apply(self, df: DataFrame, label: str, series: Series) -> DataFrame:
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df[label] = series / series.sum()
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return df
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def __str__(self) -> str:
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return "Unit length"
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@ -0,0 +1,35 @@
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import streamlit as st
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from sklearn.cluster import KMeans
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import matplotlib.pyplot as plt
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st.header("Clustering")
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if "data" in st.session_state:
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data = st.session_state.data
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with st.form("my_form"):
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row1 = st.columns([1,1,1])
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n_clusters = row1[0].selectbox("Number of clusters", range(1, 10))
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data_name = row1[1].multiselect("Data Name",data.select_dtypes(include="number").columns, max_selections=2)
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n_init = row1[2].number_input("n_init",step=1,min_value=1)
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row2 = st.columns([1,1])
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max_iter = row1[0].number_input("max_iter",step=1,min_value=1)
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st.form_submit_button('launch')
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if len(data_name) == 2:
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x = data[data_name].to_numpy()
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kmeans = KMeans(n_clusters=n_clusters, init='random', n_init=n_init, max_iter=max_iter, random_state=111)
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y_kmeans = kmeans.fit_predict(x)
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fig, ax = plt.subplots(figsize=(12,8))
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plt.scatter(x[:, 0], x[:, 1], s=100, c=kmeans.labels_, cmap='Set1')
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plt.scatter(kmeans.cluster_centers_[:, 0], kmeans.cluster_centers_[:, 1], s=400, marker='*', color='k')
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st.pyplot(fig)
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else:
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st.error("file not loaded")
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import streamlit as st
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import matplotlib.pyplot as plt
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from sklearn.cluster import DBSCAN
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st.header("Clustering: dbscan")
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if "data" in st.session_state:
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data = st.session_state.data
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with st.form("my_form"):
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data_name = st.multiselect("Data Name", data.select_dtypes(include="number").columns, max_selections=3)
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eps = st.slider("eps", min_value=0.0, max_value=1.0, value=0.5, step=0.01)
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min_samples = st.number_input("min_samples", step=1, min_value=1, value=5)
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st.form_submit_button("launch")
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if len(data_name) >= 2 and len(data_name) <=3:
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x = data[data_name].to_numpy()
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dbscan = DBSCAN(eps=eps, min_samples=min_samples)
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y_dbscan = dbscan.fit_predict(x)
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fig = plt.figure()
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if len(data_name) == 2:
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ax = fig.add_subplot(projection='rectilinear')
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plt.scatter(x[:, 0], x[:, 1], c=y_dbscan, s=50, cmap="viridis")
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else:
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ax = fig.add_subplot(projection='3d')
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ax.scatter(x[:, 0], x[:, 1],x[:, 2], c=y_dbscan, s=50, cmap="viridis")
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st.pyplot(fig)
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else:
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st.error("file not loaded")
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import streamlit as st
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from sklearn.cluster import KMeans
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import matplotlib.pyplot as plt
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st.header("Clustering: kmeans")
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if "data" in st.session_state:
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data = st.session_state.data
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with st.form("my_form"):
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row1 = st.columns([1,1,1])
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n_clusters = row1[0].selectbox("Number of clusters", range(1,data.shape[0]))
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data_name = row1[1].multiselect("Data Name",data.select_dtypes(include="number").columns, max_selections=3)
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n_init = row1[2].number_input("n_init",step=1,min_value=1)
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row2 = st.columns([1,1])
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max_iter = row1[0].number_input("max_iter",step=1,min_value=1)
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st.form_submit_button("launch")
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if len(data_name) >= 2 and len(data_name) <=3:
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x = data[data_name].to_numpy()
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kmeans = KMeans(n_clusters=n_clusters, init="random", n_init=n_init, max_iter=max_iter, random_state=111)
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y_kmeans = kmeans.fit_predict(x)
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fig = plt.figure()
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if len(data_name) == 2:
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ax = fig.add_subplot(projection='rectilinear')
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plt.scatter(x[:, 0], x[:, 1], c=y_kmeans, s=50, cmap="viridis")
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centers = kmeans.cluster_centers_
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plt.scatter(centers[:, 0], centers[:, 1], c="black", s=200, marker="X")
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else:
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ax = fig.add_subplot(projection='3d')
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ax.scatter(x[:, 0], x[:, 1],x[:, 2], c=y_kmeans, s=50, cmap="viridis")
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centers = kmeans.cluster_centers_
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ax.scatter(centers[:, 0], centers[:, 1],centers[:, 2], c="black", s=200, marker="X")
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st.pyplot(fig)
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else:
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st.error("file not loaded")
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@ -1,32 +0,0 @@
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import streamlit as st
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from normstrategy import MVStrategy, ScalingStrategy
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if "data" in st.session_state:
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data = st.session_state.original_data
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st.session_state.original_data = data.copy()
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for column, series in data.items():
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col1, col2 = st.columns(2)
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missing_count = series.isna().sum()
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choices = MVStrategy.list_available(data, series)
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option = col1.selectbox(
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f"Missing values of {column} ({missing_count})",
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choices,
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index=1,
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key=f"mv-{column}",
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)
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# Always re-get the series to avoid reusing an invalidated series pointer
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data = option.apply(data, column, data[column])
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choices = ScalingStrategy.list_available(data, series)
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option = col2.selectbox(
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"Scaling",
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choices,
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key=f"scaling-{column}",
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)
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data = option.apply(data, column, data[column])
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st.write(data)
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st.session_state.data = data
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else:
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st.error("file not loaded")
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